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Concept

bacteria (ITIS: 202421: WoRMS 6)

URI http://vocab.nerc.ac.uk/collection/S25/current/BE000540/
Within Vocab BODC parameter semantic model biological entity names
Preferred Label bacteria (ITIS: 202421: WoRMS 6)
Definition
Same As http://lsid.tdwg.org/urn:lsid:marinespecies.org:taxname:6
http://www.marinespecies.org/aphia.php?p=taxdetails&id=6
Broader S01: biological entity
Narrower P01: Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) {Total bacteria count} per unit dry weight of sediment by colony-forming units assay
P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) {Total bacteria count} per unit volume of the water body by colony-forming units assay
P01: Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) {Total bacteria count} per unit volume of the water body by colony-forming units assay
P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) {Total bacteria count} per unit dry weight of sediment by colony-forming units assay
P01: Relative abundance of amplifiable DNA sequences (95 percent confidence interval) of Bacteria (ITIS: 202421: WoRMS 6) in the water body by polymerase chain reaction with universal primer; serial dilution and relative UV fluorescence product assay and most probable number analysis
P01: Proportion of bacteria (ITIS: 202421: WoRMS 6) attached to the suspended particulate material by acridine orange staining and epifluorescence microscopy
P01: Carbon production rate of Bacteria (ITIS: 202421: WoRMS 6) per unit time per unit volume of the water body by computation as carbon from amino acid uptake, abundance and cell volume data
P01: Growth efficiency of bacteria (ITIS: 202421: WoRMS 6) in the water body [particulate <0.8um phase] by filtration, incubation
P01: Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by flow cytometry
P01: Relative abundance of amplifiable DNA sequences of Bacteria (ITIS: 202421: WoRMS 6) in the water body by polymerase chain reaction with universal primer; serial dilution and relative UV fluorescence product assay and most probable number analysis
P01: Relative hybridisation with Eubacteria probe (EUBI-III) of Bacteria (ITIS: 202421: WoRMS 6) by preservation, filtration and CARD-FISH with DAPI staining and epifluorescence microscopy and expressed as a proportion of DAPI-stained cells
P01: Relative hybridisation with Alphaproteobacteria probe (ALF968) of Bacteria (ITIS: 202421: WoRMS 6) by preservation, filtration and CARD-FISH with DAPI staining and epifluorescence microscopy and expressed as a proportion of DAPI-stained cells
P01: Relative hybridisation with SAR11 Clade probe (SAR11-441R) of Bacteria (ITIS: 202421: WoRMS 6) by preservation, filtration and CARD-FISH with DAPI staining and epifluorescence microscopy and expressed as a proportion of DAPI-stained cells
P01: Relative hybridisation with Gammaproteobacteria probe (GAM42a) of Bacteria (ITIS: 202421: WoRMS 6) by preservation, filtration and CARD-FISH with DAPI staining and epifluorescence microscopy and expressed as a proportion of DAPI-stained cells
P01: Relative hybridisation with Bacteroidetes probe (CF319A) of Bacteria (ITIS: 202421: WoRMS 6) by preservation, filtration and CARD-FISH with DAPI staining and epifluorescence microscopy and expressed as a proportion of DAPI-stained cells
P01: Relative hybridisation with Synechococcus probe (405SYN) of Bacteria (ITIS: 202421: WoRMS 6) by preservation, filtration and CARD-FISH with DAPI staining and epifluorescence microscopy and expressed as a proportion of DAPI-stained cells
P01: Relative hybridisation with Prochlorococcus probe (405PRO) of Bacteria (ITIS: 202421: WoRMS 6) by preservation, filtration and CARD-FISH with DAPI staining and epifluorescence microscopy and expressed as a proportion of DAPI-stained cells
P01: Relative hybridisation with Prochlorococcus high-light adapted ecotype I probe (645HLI) of Bacteria (ITIS: 202421: WoRMS 6) by preservation, filtration and CARD-FISH with DAPI staining and epifluorescence microscopy and expressed as a proportion of DAPI-stained cells
P01: Relative hybridisation with Prochlorococcus high-light adapted ecotype II probe (645HLII) of Bacteria (ITIS: 202421: WoRMS 6) by preservation, filtration and CARD-FISH with DAPI staining and epifluorescence microscopy and expressed as a proportion of DAPI-stained cells
P01: Relative hybridisation with Eubacteria probe (EUBI-III) standard deviation of Bacteria (ITIS: 202421: WoRMS 6) by preservation, filtration and CARD-FISH with DAPI staining and epifluorescence microscopy and expressed as a proportion of DAPI-stained cells
P01: Relative hybridisation with Alphaproteobacteria probe (ALF968) standard deviation of Bacteria (ITIS: 202421: WoRMS 6) by preservation, filtration and CARD-FISH with DAPI staining and epifluorescence microscopy and expressed as a proportion of DAPI-stained cells
P01: Relative hybridisation with SAR11 Clade probe (SAR11-441R) standard deviation of Bacteria (ITIS: 202421: WoRMS 6) by preservation, filtration and CARD-FISH with DAPI staining and epifluorescence microscopy and expressed as a proportion of DAPI-stained cells
P01: Relative hybridisation with Gammaproteobacteria probe (GAM42a) standard deviation of Bacteria (ITIS: 202421: WoRMS 6) by preservation, filtration and CARD-FISH with DAPI staining and epifluorescence microscopy and expressed as a proportion of DAPI-stained cells
P01: Relative hybridisation with Bacteroidetes probe (CF319A) standard deviation of Bacteria (ITIS: 202421: WoRMS 6) by preservation, filtration and CARD-FISH with DAPI staining and epifluorescence microscopy and expressed as a proportion of DAPI-stained cells
P01: Relative hybridisation with Synechococcus probe (405SYN) standard deviation of Bacteria (ITIS: 202421: WoRMS 6) by preservation, filtration and CARD-FISH with DAPI staining and epifluorescence microscopy and expressed as a proportion of DAPI-stained cells
P01: Relative hybridisation with Prochlorococcus probe (405PRO) standard deviation of Bacteria (ITIS: 202421: WoRMS 6) by preservation, filtration and CARD-FISH with DAPI staining and epifluorescence microscopy and expressed as a proportion of DAPI-stained cells
P01: Relative hybridisation with Prochlorococcus high-light adapted ecotype I probe (645HLI) standard deviation of Bacteria (ITIS: 202421: WoRMS 6) by preservation, filtration and CARD-FISH with DAPI staining and epifluorescence microscopy and expressed as a proportion of DAPI-stained cells
P01: Relative hybridisation with Prochlorococcus high-light adapted ecotype II probe (645HLII) standard deviation of Bacteria (ITIS: 202421: WoRMS 6) by preservation, filtration and CARD-FISH with DAPI staining and epifluorescence microscopy and expressed as a proportion of DAPI-stained cells
P01: Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by DAPI staining and microscopy
P01: Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by unspecified staining and microscopy
P01: Carbon biomass of Bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by acridine orange staining and epifluorescence microscopy and abundance to carbon conversion
P01: Carbon biomass of Bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by DAPI staining and optical microscopy and abundance to carbon conversion
P01: Carbon biomass of Bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body
P01: Protein biomass of Bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by automated flow cytometry and protein fluorescence
P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of experiment water sample by SYBR Green I staining and flow cytometry
P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by flow cytometry
P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by acridine orange staining and microscopy
P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by DAPI staining and microscopy
P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by unspecified staining and microscopy
P01: Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) per unit volume of experiment water sample by SYBR Green I staining and flow cytometry
P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the sediment
P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body
P01: Grazing turnover rate (hourly) of Bacteria (ITIS: 202421: WoRMS 6) per unit time in the water body by parallel incubations with and without grazers, acridine orange staining and epifluorescence microscopy and processing after Wright and Coffin (1984)
P01: Median size of Bacteria (ITIS: 202421: WoRMS 6) by acridine orange staining and image analysis
P01: Median volume of Bacteria (ITIS: 202421: WoRMS 6) by DAPI staining and image analysis
Note accepted
Deprecated false
Alternative Label
Version 2
Has Current Version http://vocab.nerc.ac.uk/collection/S25/current/BE000540/2/
Authored On 2019-01-21 14:18:34

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