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Concept

Bacteria generic abundance in water bodies

URI	http://vocab.nerc.ac.uk/collection/P02/current/BNTX/
Within Vocab	SeaDataNet Parameter Discovery Vocabulary
Preferred Label	Bacteria generic abundance in water bodies
Definition	Any enumeration of bacteria (Kingdom Monera so includes cyanobacteria) designated by terms other than taxonomic names (e.g. total) in any body of fresh or salt water.
Broader	D01: Parameters L19: theme P03: Bacteria and viruses P03: Biota abundance, biomass and diversity P04: EARTH SCIENCE > Biosphere > Microbiota Taxonomy > Bacteria P05: biota P05: oceans P22: Répartition des espèces P22: Distribuição das espécies P22: Species distribution P22: Distribución de las especies
Related	P04: EARTH SCIENCE > Oceans > Marine Biology > Marine Microbiota
Narrower	P01: Abundance standard deviation of Gammaproteobacteria (WoRMS 393018) [Subcomponent: nifH gene copies Subgroup: gamma A phylotype] per unit volume of the water body by filtration, DNA extraction, PicoGreen staining, primer selection and quantitative PCR P01: Abundance of faecal coliform bacteria per unit volume of the water body by colony-forming units assay P01: Abundance of faecal streptococci per unit volume of the water body by colony-forming units assay P01: Abundance of coliform bacteria {Total coliforms count} per unit volume of the water body by colony-forming units assay P01: Abundance standard deviation of coliform bacteria {Total coliforms count} per unit volume of the water body by colony-forming units assay P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) {Total bacteria count} per unit volume of the water body by colony-forming units assay P01: Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) {Total bacteria count} per unit volume of the water body by colony-forming units assay P01: Relative abundance of amplifiable DNA sequences (95 percent confidence interval) of Bacteria (ITIS: 202421: WoRMS 6) in the water body by polymerase chain reaction with universal primer; serial dilution and relative UV fluorescence product assay and most probable number analysis P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: group B1] per unit volume of the water body by flow cytometry P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: group B2] per unit volume of the water body by flow cytometry P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: Zubkov population 1] per unit volume of the water body by flow cytometry P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: Zubkov population 2] per unit volume of the water body by flow cytometry P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: Zubkov population 4] per unit volume of the water body by flow cytometry P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic; low nucleic acid cell content] per unit volume of the water body by flow cytometry P01: Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic; low nucleic acid cell content] per unit volume of the water body by flow cytometry P01: Abundance of Gammaproteobacteria (WoRMS 393018) [Subcomponent: nifH gene copies Subgroup: gamma A phylotype] per unit volume of the water body by filtration, DNA extraction, PicoGreen staining, primer selection and quantitative PCR P01: Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by flow cytometry P01: Relative abundance of amplifiable DNA sequences of Bacteroidetes [Subgroup: p3-42] in the water body by polymerase chain reaction with p3-42 primer; serial dilution and relative UV fluorescence product assay and most probable number analysis P01: Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic] per unit volume of the water body by flow cytometry and subtraction of Synechococcus+Prochlorococcus from total bacteria P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic] per unit volume of the water body by flow cytometry and subtraction of Synechococcus+Prochlorococcus from total bacteria P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic] per unit volume of the water body P01: Relative abundance of amplifiable DNA sequences of Bacteroidetes [Subgroup: p1-7] in the water body by polymerase chain reaction with p1-7 primer; serial dilution and relative UV fluorescence product assay and most probable number analysis P01: Abundance of Cyanobacteria (ITIS: 601: WoRMS 146537) [Subcomponent: nifH gene copies Subgroup: unicellular group A phylotype] per unit volume of the water body by filtration, DNA extraction, PicoGreen staining, primer selection and quantitative PCR P01: Relative abundance of amplifiable DNA sequences (95 percent confidence interval) of Bacteroidetes [Subgroup: True Agg58] in the water body by polymerase chain reaction with True Agg58 primer; serial dilution and relative UV fluorescence product assay and most probable number analysis P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: high nucleic acid cell content] per unit volume of the water body by SYBR Green I staining and flow cytometry P01: Relative abundance of amplifiable DNA sequences of Bacteria (ITIS: 202421: WoRMS 6) in the water body by polymerase chain reaction with universal primer; serial dilution and relative UV fluorescence product assay and most probable number analysis P01: Relative abundance of amplifiable DNA sequences (95 percent confidence interval) of Bacteroidetes [Subgroup: p3-42] in the water body by polymerase chain reaction with p3-42 primer; serial dilution and relative UV fluorescence product assay and most probable number analysis P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic; high nucleic acid cell content] per unit volume of the water body by flow cytometry P01: Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic; high nucleic acid cell content] per unit volume of the water body by flow cytometry P01: Abundance of Aphanizomenon and Oscillatoria per unit volume of the water body by optical microscopy P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: low nucleic acid cell content] per unit volume of the water body by SYBR Green I staining and flow cytometry P01: Abundance of Picocyanobacteria [Subcomponent: 16S ribosomal RNA molecules Subgroup: clade 1] per unit volume of the water body by vacuum filtration and quantitative PCR P01: Abundance of Picocyanobacteria [Subcomponent: 16S ribosomal RNA molecules Subgroup: clade 2] per unit volume of the water body by vacuum filtration and quantitative PCR P01: Abundance of Picocyanobacteria [Subcomponent: 16S ribosomal RNA molecules Subgroup: clade 3] per unit volume of the water body by vacuum filtration and quantitative PCR P01: Abundance of Picocyanobacteria [Subcomponent: 16S ribosomal RNA molecules Subgroup: clade 4] per unit volume of the water body by vacuum filtration and quantitative PCR P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: group PSB1 autotrophic] per unit volume of the water body by flow cytometry P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: group PSB2 autotrophic] per unit volume of the water body by flow cytometry P01: Abundance of prokaryotic cells per unit volume of the water body by flow cytometry P01: Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by DAPI staining and microscopy P01: Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by unspecified staining and microscopy P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) [Size: 0.2-200um] per unit volume of the water body by DAPI staining and microscopy P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) [Size: 0.2-0.8um] per unit volume of the water body by DAPI staining and microscopy P01: Abundance standard deviation of Cyanobacteria (ITIS: 601: WoRMS 146537) [Subcomponent: nifH gene copies Subgroup: unicellular group A phylotype] per unit volume of the water body by filtration, DNA extraction, PicoGreen staining, primer selection and quantitative PCR P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by flow cytometry P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by acridine orange staining and microscopy P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by DAPI staining and microscopy P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) [Size: >0.4um] per unit volume of the water body by unspecified staining and microscopy P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by unspecified staining and microscopy P01: Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body P01: Abundance standard deviation of Cyanobacteria (ITIS: 601: WoRMS 146537) [Subcomponent: nifH gene copies Subgroup: filamentous phylotype] per unit volume of the water body by filtration, DNA extraction, PicoGreen staining, primer selection and quantitative PCR P01: Relative abundance of amplifiable DNA sequences of Bacteroidetes [Subgroup: True Agg58] in the water body by polymerase chain reaction with True Agg58 primer; serial dilution and relative UV fluorescence product assay and most probable number analysis P01: Abundance of Cyanobacteria (ITIS: 601: WoRMS 146537) [Subcomponent: nifH gene copies Subgroup: filamentous phylotype] per unit volume of the water body by filtration, DNA extraction, PicoGreen staining, primer selection and quantitative PCR P01: Relative abundance of amplifiable DNA sequences (95 percent confidence interval) of Bacteroidetes [Subgroup: p1-7] in the water body by polymerase chain reaction with p1-7 primer; serial dilution and relative UV fluorescence product assay and most probable number analysis P09: NUMBER OF SW BACTERIA P09: NB OF HETEROTROPHIC BACTERIA P09: HIGH NUCLEIC ACID CONTENT P09: NUMBER OF PICOPROKARYOTES
Note	accepted
Deprecated	false
Alternative Label	BactGenAbundWater
Version	3
Has Current Version	http://vocab.nerc.ac.uk/collection/P02/current/BNTX/3/
Authored On	2010-10-22 10:06:41

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