Concept
Bacteria generic abundance in water bodies
| URI | http://vocab.nerc.ac.uk/collection/P02/current/BNTX/ | |
|---|---|---|
| Within Vocab | SeaDataNet Parameter Discovery Vocabulary | |
| Alternative Labels | BactGenAbundWater | |
| Definition | Any enumeration of bacteria (Kingdom Monera so includes cyanobacteria) designated by terms other than taxonomic names (e.g. total) in any body of fresh or salt water. | |
| Date | 2010-10-22T10:06:41 | |
| Identifier | SDN:P02::BNTX | |
| Note | accepted | |
| Has Current Version | 3 | |
| Version | 1 , 2 | |
| version | 3 | |
| inScheme | http://vocab.nerc.ac.uk/scheme/EDMED_DCAT_THEMES/current/ | |
| Broader | P05:002 | biota |
D01:D0100001 | Parameters | |
P22:32 | Species distribution | |
L19:005 | theme | |
P05:014 | oceans | |
P03:B070 | Biota abundance, biomass and diversity | |
P03:B005 | Bacteria and viruses | |
P04:G380 | EARTH SCIENCE > Biosphere > Microbiota Taxonomy > Bacteria | |
| Narrower | P01:JB353114 | Relative abundance of amplifiable DNA sequences of Bacteroidetes [Subgroup: p1-7] in the water body by polymerase chain reaction with p1-7 primer; serial dilution and relative UV fluorescence product assay and most probable number analysis |
P01:Z69B8110 | Relative abundance of amplifiable DNA sequences (95 percent confidence interval) of Bacteroidetes [Subgroup: p1-7] in the water body by polymerase chain reaction with p1-7 primer; serial dilution and relative UV fluorescence product assay and most probable number analysis | |
P01:Y2227937 | Relative abundance of amplifiable DNA sequences of Bacteroidetes [Subgroup: True Agg58] in the water body by polymerase chain reaction with True Agg58 primer; serial dilution and relative UV fluorescence product assay and most probable number analysis | |
P01:O5899697 | Relative abundance of amplifiable DNA sequences (95 percent confidence interval) of Bacteroidetes [Subgroup: p3-42] in the water body by polymerase chain reaction with p3-42 primer; serial dilution and relative UV fluorescence product assay and most probable number analysis | |
P01:H764B7A0 | Relative abundance of amplifiable DNA sequences of Bacteroidetes [Subgroup: p3-42] in the water body by polymerase chain reaction with p3-42 primer; serial dilution and relative UV fluorescence product assay and most probable number analysis | |
P01:O36B7282 | Relative abundance of amplifiable DNA sequences of Bacteria (ITIS: 202421: WoRMS 6) in the water body by polymerase chain reaction with universal primer; serial dilution and relative UV fluorescence product assay and most probable number analysis | |
P01:N63B7962 | Relative abundance of amplifiable DNA sequences (95 percent confidence interval) of Bacteroidetes [Subgroup: True Agg58] in the water body by polymerase chain reaction with True Agg58 primer; serial dilution and relative UV fluorescence product assay and most probable number analysis | |
P01:B75A49A5 | Relative abundance of amplifiable DNA sequences (95 percent confidence interval) of Bacteria (ITIS: 202421: WoRMS 6) in the water body by polymerase chain reaction with universal primer; serial dilution and relative UV fluorescence product assay and most probable number analysis | |
P01:HBCCAFSD | Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic] per unit volume of the water body by flow cytometry and subtraction of Synechococcus+Prochlorococcus from total bacteria | |
P01:P18318A9 | Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic; high nucleic acid cell content] per unit volume of the water body by flow cytometry | |
P01:PYPKAFTX | Abundance of prokaryotic cells per unit volume of the water body by flow cytometry | |
P01:TBCCMDPZ | Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by DAPI staining and microscopy | |
P01:BCPCAFZ4 | Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: Zubkov population 4] per unit volume of the water body by flow cytometry | |
P01:AA844163 | Abundance standard deviation of Gammaproteobacteria (WoRMS 393018) [Subcomponent: nifH gene copies Subgroup: gamma A phylotype] per unit volume of the water body by filtration, DNA extraction, PicoGreen staining, primer selection and quantitative PCR | |
P01:TBCCMIP2 | Abundance of bacteria (ITIS: 202421: WoRMS 6) [Size: >0.4um] per unit volume of the water body by unspecified staining and microscopy | |
P01:D1453672 | Abundance of Gammaproteobacteria (WoRMS 393018) [Subcomponent: nifH gene copies Subgroup: gamma A phylotype] per unit volume of the water body by filtration, DNA extraction, PicoGreen staining, primer selection and quantitative PCR | |
P09:BCCW | NUMBER OF SW BACTERIA | |
P01:C804B6A6 | Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic; low nucleic acid cell content] per unit volume of the water body by flow cytometry | |
P01:Z4124515 | Abundance of Cyanobacteria (ITIS: 601: WoRMS 146537) [Subcomponent: nifH gene copies Subgroup: filamentous phylotype] per unit volume of the water body by filtration, DNA extraction, PicoGreen staining, primer selection and quantitative PCR | |
P01:SFTBMDPA | Abundance of bacteria (ITIS: 202421: WoRMS 6) [Size: 0.2-200um] per unit volume of the water body by DAPI staining and microscopy | |
P09:HBAW | NB OF HETEROTROPHIC BACTERIA | |
P01:ATCXTBW1 | Abundance of bacteria (ITIS: 202421: WoRMS 6) {Total bacteria count} per unit volume of the water body by colony-forming units assay | |
P01:P5B29926 | Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: low nucleic acid cell content] per unit volume of the water body by SYBR Green I staining and flow cytometry | |
P01:ATCXCBW1 | Abundance of coliform bacteria {Total coliforms count} per unit volume of the water body by colony-forming units assay | |
P01:HBCCXXXX | Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic] per unit volume of the water body | |
P01:SDTBMDPZ | Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by DAPI staining and microscopy | |
P01:C804B6SD | Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic; low nucleic acid cell content] per unit volume of the water body by flow cytometry | |
P01:SDTBMIPZ | Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by unspecified staining and microscopy | |
P01:AFSXSBW1 | Abundance of faecal streptococci per unit volume of the water body by colony-forming units assay | |
P01:SFTBMDPB | Abundance of bacteria (ITIS: 202421: WoRMS 6) [Size: 0.2-0.8um] per unit volume of the water body by DAPI staining and microscopy | |
P01:ATCXCBW2 | Abundance standard deviation of coliform bacteria {Total coliforms count} per unit volume of the water body by colony-forming units assay | |
P01:H396080A | Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by flow cytometry | |
P01:ATCXTBW2 | Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) {Total bacteria count} per unit volume of the water body by colony-forming units assay | |
P01:TBCCMAPZ | Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by acridine orange staining and microscopy | |
P09:HNAC | HIGH NUCLEIC ACID CONTENT | |
P01:X27B9BA9 | Abundance standard deviation of Cyanobacteria (ITIS: 601: WoRMS 146537) [Subcomponent: nifH gene copies Subgroup: filamentous phylotype] per unit volume of the water body by filtration, DNA extraction, PicoGreen staining, primer selection and quantitative PCR | |
P01:TAB9993A | Abundance standard deviation of Cyanobacteria (ITIS: 601: WoRMS 146537) [Subcomponent: nifH gene copies Subgroup: unicellular group A phylotype] per unit volume of the water body by filtration, DNA extraction, PicoGreen staining, primer selection and quantitative PCR | |
P01:BCPCAFZ2 | Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: Zubkov population 2] per unit volume of the water body by flow cytometry | |
P01:P394M01Z | Abundance of Aphanizomenon and Oscillatoria per unit volume of the water body by optical microscopy | |
P01:AFCXCBW1 | Abundance of faecal coliform bacteria per unit volume of the water body by colony-forming units assay | |
P01:PICOABC3 | Abundance of Picocyanobacteria [Subcomponent: 16S ribosomal RNA molecules Subgroup: clade 3] per unit volume of the water body by vacuum filtration and quantitative PCR | |
P01:PYPKAFB1 | Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: group PSB1 autotrophic] per unit volume of the water body by flow cytometry | |
P01:TBCCMIPZ | Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by unspecified staining and microscopy | |
P01:TBCCXXXX | Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body | |
P01:PICOABC1 | Abundance of Picocyanobacteria [Subcomponent: 16S ribosomal RNA molecules Subgroup: clade 1] per unit volume of the water body by vacuum filtration and quantitative PCR | |
P01:PICOABC4 | Abundance of Picocyanobacteria [Subcomponent: 16S ribosomal RNA molecules Subgroup: clade 4] per unit volume of the water body by vacuum filtration and quantitative PCR | |
P01:NA016999 | Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: high nucleic acid cell content] per unit volume of the water body by SYBR Green I staining and flow cytometry | |
P01:HBCCAFTX | Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic] per unit volume of the water body by flow cytometry and subtraction of Synechococcus+Prochlorococcus from total bacteria | |
P01:PICOABC2 | Abundance of Picocyanobacteria [Subcomponent: 16S ribosomal RNA molecules Subgroup: clade 2] per unit volume of the water body by vacuum filtration and quantitative PCR | |
P01:TBCCAFTX | Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by flow cytometry | |
P01:P18318SD | Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic; high nucleic acid cell content] per unit volume of the water body by flow cytometry | |
P01:PYPKAFB2 | Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: group PSB2 autotrophic] per unit volume of the water body by flow cytometry | |
P01:BCPCAFZ1 | Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: Zubkov population 1] per unit volume of the water body by flow cytometry | |
P01:L0302763 | Abundance of Cyanobacteria (ITIS: 601: WoRMS 146537) [Subcomponent: nifH gene copies Subgroup: unicellular group A phylotype] per unit volume of the water body by filtration, DNA extraction, PicoGreen staining, primer selection and quantitative PCR | |
P01:BACT00B2 | Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: group B2] per unit volume of the water body by flow cytometry | |
P09:PPKF | NUMBER OF PICOPROKARYOTES | |
P01:BACT00B1 | Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: group B1] per unit volume of the water body by flow cytometry | |
| Related | P04:G842 | EARTH SCIENCE > Oceans > Marine Biology > Marine Microbiota |
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