| URI |
http://vocab.nerc.ac.uk/collection/P02/current/BNTX/ |
| Within Vocab |
SeaDataNet Parameter Discovery Vocabulary |
| Alternative Labels |
BactGenAbundWater
|
| Definition |
Any enumeration of bacteria (Kingdom Monera so includes cyanobacteria) designated by terms other than taxonomic names (e.g. total) in any body of fresh or salt water. |
| Date |
2010-10-22T10:06:41 |
| Identifier |
SDN:P02::BNTX |
| Note |
accepted |
| Has Current Version |
3 |
| Version |
1
,
2
|
| version |
3 |
| inScheme |
http://vocab.nerc.ac.uk/scheme/EDMED_DCAT_THEMES/current/ |
|
Broader
|
P04:G380 |
EARTH SCIENCE > Biosphere > Microbiota Taxonomy > Bacteria |
Mapping: 282 |
|
| D01:D0100001 |
Parameters |
Mapping: 1392717 |
|
| P22:32 |
Species distribution |
Mapping: 172501 |
|
| L19:005 |
theme |
Mapping: 206367 |
|
| P03:B005 |
Bacteria and viruses |
Mapping: 2159 |
|
| P03:B070 |
Biota abundance, biomass and diversity |
Mapping: 171545 |
|
| P05:002 |
biota |
Mapping: 33457 |
|
| P05:014 |
oceans |
Mapping: 33331 |
|
Narrower
|
|
| P09:HNAC |
HIGH NUCLEIC ACID CONTENT |
Mapping: 1622938 |
|
| P09:HBAW |
NB OF HETEROTROPHIC BACTERIA |
Mapping: 111728 |
|
| P09:PPKF |
NUMBER OF PICOPROKARYOTES |
Mapping: 864472 |
|
| P09:BCCW |
NUMBER OF SW BACTERIA |
Mapping: 112004 |
|
| P01:P394M01Z |
Abundance of Aphanizomenon and Oscillatoria per unit volume of the water body by optical microscopy |
Mapping: 402650 |
|
| P01:SFTBMDPB |
Abundance of bacteria (ITIS: 202421: WoRMS 6) [Size: 0.2-0.8um] per unit volume of the water body by DAPI staining and microscopy |
Mapping: 362794 |
|
| P01:SFTBMDPA |
Abundance of bacteria (ITIS: 202421: WoRMS 6) [Size: 0.2-200um] per unit volume of the water body by DAPI staining and microscopy |
Mapping: 362790 |
|
| P01:TBCCMIP2 |
Abundance of bacteria (ITIS: 202421: WoRMS 6) [Size: >0.4um] per unit volume of the water body by unspecified staining and microscopy |
Mapping: 391582 |
|
| P01:BACT00B1 |
Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: group B1] per unit volume of the water body by flow cytometry |
Mapping: 431742 |
|
| P01:BACT00B2 |
Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: group B2] per unit volume of the water body by flow cytometry |
Mapping: 431746 |
|
| P01:PYPKAFB1 |
Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: group PSB1 autotrophic] per unit volume of the water body by flow cytometry |
Mapping: 431966 |
|
| P01:PYPKAFB2 |
Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: group PSB2 autotrophic] per unit volume of the water body by flow cytometry |
Mapping: 428934 |
|
| P01:P18318A9 |
Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic; high nucleic acid cell content] per unit volume of the water body by flow cytometry |
Mapping: 445186 |
|
| P01:C804B6A6 |
Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic; low nucleic acid cell content] per unit volume of the water body by flow cytometry |
Mapping: 445190 |
|
| P01:HBCCXXXX |
Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic] per unit volume of the water body |
Mapping: 445214 |
|
| P01:HBCCAFTX |
Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic] per unit volume of the water body by flow cytometry and subtraction of Synechococcus+Prochlorococcus from total bacteria |
Mapping: 396162 |
|
| P01:NA016999 |
Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: high nucleic acid cell content] per unit volume of the water body by SYBR Green I staining and flow cytometry |
Mapping: 440870 |
|
| P01:P5B29926 |
Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: low nucleic acid cell content] per unit volume of the water body by SYBR Green I staining and flow cytometry |
Mapping: 440874 |
|
| P01:BCPCAFZ1 |
Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: Zubkov population 1] per unit volume of the water body by flow cytometry |
Mapping: 385470 |
|
| P01:BCPCAFZ2 |
Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: Zubkov population 2] per unit volume of the water body by flow cytometry |
Mapping: 385474 |
|
| P01:BCPCAFZ4 |
Abundance of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: Zubkov population 4] per unit volume of the water body by flow cytometry |
Mapping: 385478 |
|
| P01:TBCCXXXX |
Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body |
Mapping: 445206 |
|
| P01:TBCCMAPZ |
Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by acridine orange staining and microscopy |
Mapping: 358810 |
|
| P01:TBCCMDPZ |
Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by DAPI staining and microscopy |
Mapping: 358806 |
|
| P01:TBCCAFTX |
Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by flow cytometry |
Mapping: 372270 |
|
| P01:TBCCMIPZ |
Abundance of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by unspecified staining and microscopy |
Mapping: 360874 |
|
| P01:ATCXTBW1 |
Abundance of bacteria (ITIS: 202421: WoRMS 6) {total bacteria count} per unit volume of the water body by colony-forming units assay |
Mapping: 1580292 |
|
| P01:ATCXCBW1 |
Abundance of coliform bacteria {total coliforms count} per unit volume of the water body by colony-forming units assay |
Mapping: 1580326 |
|
| P01:Z4124515 |
Abundance of Cyanobacteria (ITIS: 601: WoRMS 146537) [Subcomponent: nifH gene copies Subgroup: filamentous phylotype] per unit volume of the water body by filtration, DNA extraction, PicoGreen staining, primer selection and quantitative PCR |
Mapping: 371558 |
|
| P01:L0302763 |
Abundance of Cyanobacteria (ITIS: 601: WoRMS 146537) [Subcomponent: nifH gene copies Subgroup: unicellular group A phylotype] per unit volume of the water body by filtration, DNA extraction, PicoGreen staining, primer selection and quantitative PCR |
Mapping: 373514 |
|
| P01:AFCXCBW1 |
Abundance of faecal coliform bacteria per unit volume of the water body by colony-forming units assay |
Mapping: 1585103 |
|
| P01:AFSXSBW1 |
Abundance of faecal streptococci per unit volume of the water body by colony-forming units assay |
Mapping: 1585118 |
|
| P01:D1453672 |
Abundance of Gammaproteobacteria (WoRMS 393018) [Subcomponent: nifH gene copies Subgroup: gamma A phylotype] per unit volume of the water body by filtration, DNA extraction, PicoGreen staining, primer selection and quantitative PCR |
Mapping: 373510 |
|
| P01:PICOABC1 |
Abundance of Picocyanobacteria [Subcomponent: 16S ribosomal RNA molecules Subgroup: clade 1] per unit volume of the water body by vacuum filtration and quantitative PCR |
Mapping: 428938 |
|
| P01:PICOABC2 |
Abundance of Picocyanobacteria [Subcomponent: 16S ribosomal RNA molecules Subgroup: clade 2] per unit volume of the water body by vacuum filtration and quantitative PCR |
Mapping: 428942 |
|
| P01:PICOABC3 |
Abundance of Picocyanobacteria [Subcomponent: 16S ribosomal RNA molecules Subgroup: clade 3] per unit volume of the water body by vacuum filtration and quantitative PCR |
Mapping: 428946 |
|
| P01:PICOABC4 |
Abundance of Picocyanobacteria [Subcomponent: 16S ribosomal RNA molecules Subgroup: clade 4] per unit volume of the water body by vacuum filtration and quantitative PCR |
Mapping: 428950 |
|
| P01:PYPKAFTX |
Abundance of prokaryotic cells per unit volume of the water body by flow cytometry |
Mapping: 370962 |
|
| P01:P18318SD |
Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic; high nucleic acid cell content] per unit volume of the water body by flow cytometry |
Mapping: 811318 |
|
| P01:C804B6SD |
Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic; low nucleic acid cell content] per unit volume of the water body by flow cytometry |
Mapping: 811310 |
|
| P01:HBCCAFSD |
Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) [Subgroup: heterotrophic] per unit volume of the water body by flow cytometry and subtraction of Synechococcus+Prochlorococcus from total bacteria |
Mapping: 805206 |
|
| P01:SDTBMDPZ |
Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by DAPI staining and microscopy |
Mapping: 364662 |
|
| P01:H396080A |
Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by flow cytometry |
Mapping: 428350 |
|
| P01:SDTBMIPZ |
Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) per unit volume of the water body by unspecified staining and microscopy |
Mapping: 360878 |
|
| P01:ATCXTBW2 |
Abundance standard deviation of bacteria (ITIS: 202421: WoRMS 6) {total bacteria count} per unit volume of the water body by colony-forming units assay |
Mapping: 1580306 |
|
| P01:ATCXCBW2 |
Abundance standard deviation of coliform bacteria {total coliforms count} per unit volume of the water body by colony-forming units assay |
Mapping: 1580322 |
|
| P01:X27B9BA9 |
Abundance standard deviation of Cyanobacteria (ITIS: 601: WoRMS 146537) [Subcomponent: nifH gene copies Subgroup: filamentous phylotype] per unit volume of the water body by filtration, DNA extraction, PicoGreen staining, primer selection and quantitative PCR |
Mapping: 371554 |
|
| P01:TAB9993A |
Abundance standard deviation of Cyanobacteria (ITIS: 601: WoRMS 146537) [Subcomponent: nifH gene copies Subgroup: unicellular group A phylotype] per unit volume of the water body by filtration, DNA extraction, PicoGreen staining, primer selection and quantitative PCR |
Mapping: 373838 |
|
| P01:AA844163 |
Abundance standard deviation of Gammaproteobacteria (WoRMS 393018) [Subcomponent: nifH gene copies Subgroup: gamma A phylotype] per unit volume of the water body by filtration, DNA extraction, PicoGreen staining, primer selection and quantitative PCR |
Mapping: 373506 |
|
| P01:B75A49A5 |
Relative abundance of amplifiable DNA sequences (95 percent confidence interval) of Bacteria (ITIS: 202421: WoRMS 6) in the water body by polymerase chain reaction with universal primer; serial dilution and relative UV fluorescence product assay and most probable number analysis |
Mapping: 428294 |
|
| P01:Z69B8110 |
Relative abundance of amplifiable DNA sequences (95 percent confidence interval) of Bacteroidetes [Subgroup: p1-7] in the water body by polymerase chain reaction with p1-7 primer; serial dilution and relative UV fluorescence product assay and most probable number analysis |
Mapping: 428302 |
|
| P01:O5899697 |
Relative abundance of amplifiable DNA sequences (95 percent confidence interval) of Bacteroidetes [Subgroup: p3-42] in the water body by polymerase chain reaction with p3-42 primer; serial dilution and relative UV fluorescence product assay and most probable number analysis |
Mapping: 428306 |
|
| P01:N63B7962 |
Relative abundance of amplifiable DNA sequences (95 percent confidence interval) of Bacteroidetes [Subgroup: True Agg58] in the water body by polymerase chain reaction with True Agg58 primer; serial dilution and relative UV fluorescence product assay and most probable number analysis |
Mapping: 428298 |
|
| P01:O36B7282 |
Relative abundance of amplifiable DNA sequences of Bacteria (ITIS: 202421: WoRMS 6) in the water body by polymerase chain reaction with universal primer; serial dilution and relative UV fluorescence product assay and most probable number analysis |
Mapping: 427102 |
|
| P01:JB353114 |
Relative abundance of amplifiable DNA sequences of Bacteroidetes [Subgroup: p1-7] in the water body by polymerase chain reaction with p1-7 primer; serial dilution and relative UV fluorescence product assay and most probable number analysis |
Mapping: 428286 |
|
| P01:H764B7A0 |
Relative abundance of amplifiable DNA sequences of Bacteroidetes [Subgroup: p3-42] in the water body by polymerase chain reaction with p3-42 primer; serial dilution and relative UV fluorescence product assay and most probable number analysis |
Mapping: 428290 |
|
| P01:Y2227937 |
Relative abundance of amplifiable DNA sequences of Bacteroidetes [Subgroup: True Agg58] in the water body by polymerase chain reaction with True Agg58 primer; serial dilution and relative UV fluorescence product assay and most probable number analysis |
Mapping: 427330 |
|
Related
|
P04:G842 |
EARTH SCIENCE > Oceans > Marine Biology > Marine Microbiota |
Mapping: 554 |
