Vocabulary
BODC parameter semantic model biological entity subgroup terms
| URI | http://vocab.nerc.ac.uk/collection/S13/current/ |
|---|---|
| Description | Controlled vocabulary defining the terms that may be used for ad-hoc qualification of a biological entity (component of the what theme) in the BODC parameter semantic model. |
| Creator | British Oceanographic Data Centre |
| Modified | 2023-08-26 |
| Version Info | 34 |
| Identifier | S13 |
| Register Manager | British Oceanographic Data Centre |
| Register Owner | British Oceanographic Data Centre |
| See Also | https://github.com/nvs-vocabs/S13 |
| License | https://creativecommons.org/licenses/by/4.0/ |
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Members
| ID ↑ | Preferred Label ↑ | Definition ↑ | Date ↑ |
|---|---|---|---|
| S189 | #1 | Label used by the data originator to differentiate an unidentified subset of the named organism: only to be used if 'Type 1' or 'sp. 1' are not appropriate. | 2014-11-18 |
| S1360 | 1-year old | The specimen or group of specimen have been categorised as being 1-year old. | 2019-03-07 |
| S1361 | 2-year old | The specimen or group of specimen have been categorised as being 2-year old. | 2019-03-07 |
| S1362 | 3-year old | The specimen or group of specimen have been categorised as being 3-year old. | 2019-03-07 |
| S131 | True Agg58 | 2006-02-17 | |
| S1350 | Type 1 | A recognised morphotype of the named organism | 2014-08-21 |
| S1354 | Type 1 / sensu Throndsen 1972 | A recognised morphotype of the named organism. The term is usually associated with coccolithophores. | 2016-07-01 |
| S162 | Type 2 | A recognised morphotype of the named organism | 2014-08-21 |
| S163 | Type 3 | A recognised morphotype of the named organism | 2014-08-21 |
| S164 | Type 4 | A recognised morphotype of the named organism | 2014-08-21 |
| S1351 | Type 5 | A recognised morphotype of the named organism | 2014-08-21 |
| S188 | Type D | A recognised morphotype of the named organism. | 2014-11-18 |
| S132 | Zubkov population 1 | 2006-02-17 | |
| S133 | Zubkov population 2 | 2006-02-17 | |
| S134 | Zubkov population 4 | 2006-02-17 | |
| S194 | aerobic mesophilic | A term describing organisms that survive and grow in an oxygenated environment, in moderate temperatures, typically between 20 degrees C to 45 degrees C | 2017-08-25 |
| S1349 | aplastidic | A term describing cells that do not have organelles termed plastids for the storage of pigments or food | 2011-08-01 |
| S135 | autotrophic | A term describing organisms capable of making organic molecules from inorganic sources using energy from light via photosynthesis or from chemical reactions via chemosynthesis. | 2022-04-27 |
| S136 | bathypelagic | 2006-02-17 | |
| S1366 | bloom | Term to be used when the property reported is said to be the characteristic of a bloom. An algal bloom is defined as a rapid increase and accumulation of algal biomass in water bodies including, for macroalgal blooms, intertidal areas. For more information see: https://en.wikipedia.org/wiki/Algal_bloom. | 2023-02-22 |
| S1336 | burrowing | A subgroup of a biological entity that normally lives within sediment | 2006-10-27 |
| S158 | clade 1 | 2006-02-17 | |
| S159 | clade 2 | 2006-02-17 | |
| S160 | clade 3 | 2006-02-17 | |
| S161 | clade 4 | 2006-02-17 | |
| S137 | coccolithophores | Single-cell prymnesiophytes characterised by the presence of calcareous plates termed coccoliths. | 2012-11-15 |
| S1358 | collapsed frustules | Applies to diatom frustules that have lost their shape. | 2017-12-09 |
| S138 | colonial | 2006-02-17 | |
| S1347 | dead | An organism that is no longer exhibiting the characteristics of life such as respiration or locomotion. | 2010-02-09 |
| S139 | deep water | 2006-02-17 | |
| S1310 | deep-adapted | 2006-02-17 | |
| S1311 | empty | 2006-02-17 | |
| S1334 | encrusting | 2006-09-18 | |
| S1356 | epiphytes | In the marine environment, epiphytes may be any organism (e.g. algae, fungi, sponges, bryozoans, ascidians, crustaceans, molluscs and any other sessile organism) that grow on the surface of seagrasses or macroalgae. | 2017-10-22 |
| S1335 | errant | 2006-09-18 | |
| S1342 | filamentous phylotype | 2010-01-17 | |
| S1368 | fresh | A recently obtained biological sample; not frozen or otherwise preserved. | 2023-05-16 |
| S1343 | gamma A phylotype | 2010-01-17 | |
| S140 | group B1 | 2006-02-17 | |
| S141 | group B2 | 2006-02-17 | |
| S144 | group P1 | 2006-02-17 | |
| S153 | group P10 | 2006-02-17 | |
| S145 | group P2 | 2006-02-17 | |
| S146 | group P3 | 2006-02-17 | |
| S147 | group P4 | 2006-02-17 | |
| S148 | group P5 | 2006-02-17 | |
| S149 | group P6 | 2006-02-17 | |
| S150 | group P7 | 2006-02-17 | |
| S151 | group P8 | 2006-02-17 | |
| S152 | group P9 | 2006-02-17 | |
| S142 | group PSB1 autotrophic | 2006-02-17 | |
| S143 | group PSB2 autotrophic | 2006-02-17 | |
| S154 | group V1 | 2006-02-17 | |
| S155 | group V2 | 2006-02-17 | |
| S156 | group V3 | 2006-02-17 | |
| S157 | group V4 | 2006-02-17 | |
| S1359 | half frustules | Applies to one of two valves or thecae making up a diatom frustule. | 2017-12-09 |
| S191 | hellenica type | A recognised morphotype of the named organism. The term is usually associated with coccolithophores. | 2014-11-19 |
| S1312 | heterotrophic | A term describing organisms that are unable of making organic molecules from inorganic sources of carbon and rely instead on the consumption of organic molecules synthesized by other organisms. | 2022-04-27 |
| S1313 | heterotrophic 2-20um+autotrophic 2-5um | 2006-02-17 | |
| S1314 | heterotrophic+autotrophic | 2006-02-17 | |
| S1339 | heterotrophic; high nucleic acid cell content | Arbitrary grouping corresponding to strong colouration resulting from DNA-binding stain combined with an absence of chlorophyll | 2009-04-16 |
| S1340 | heterotrophic; low nucleic acid cell content | Arbitrary grouping corresponding to weak colouration resulting from DNA-binding stain combined with an absence of chlorophyll | 2009-04-16 |
| S1338 | high nucleic acid cell content | Arbitrary grouping corresponding to strong colouration resulting from DNA-binding stain | 2008-10-09 |
| S1355 | hoop-coccolith coccolithophores | Coccolithophore cells or coccospheres with individual liths shaped like hoops or rings. | 2016-07-01 |
| S1357 | in chain formation | Applies to organisms that have the ability to form colonies in the form of a chain like e.g. chain-forming diatoms. | 2017-12-09 |
| S1365 | in coral tissue | The targeted biological entity is located within coral tissue. | 2022-05-13 |
| S1315 | in gelatinous mass | 2006-02-17 | |
| S1316 | like | 2006-02-17 | |
| S1346 | live | An organism that is exhibiting the characteristics of life such as respiration or locomotion. | 2010-02-09 |
| S1337 | low nucleic acid cell content | Arbitrary grouping corresponding to weak colouration resulting from DNA-binding stain | 2008-10-09 |
| S1363 | mesopelagic | An organism inhabiting the intermediate depths of the sea between the epipelagic and the bathypelagic layers. The depth range used can vary between 200 to 1100 metres or between 150 to 2000m depending on the source (source: www.fishbase.se/glossary. | 2020-02-27 |
| S1317 | motile | 2006-02-17 | |
| S1353 | nishidae type | A recognised morphotype of the named organism. The term is usually associated with coccolithophores. | 2016-07-01 |
| S1370 | non-colonial | The observed biological entity is of a non-colonial type. | 2023-06-09 |
| S1318 | non-motile | 2006-02-17 | |
| S1319 | not specified | The biological entity definition does not specify a subgroup as a component. | 2023-08-25 |
| S190 | oblonga type | A recognised morphotype of the named organism. The term is usually associated with coccolithophores. | 2014-11-19 |
| S1320 | other species | 2006-02-17 | |
| S1321 | p1-7 | 2006-02-17 | |
| S1322 | p3-42 | 2006-02-17 | |
| S1323 | parasitic | 2006-02-17 | |
| S1371 | penis-bearing females | A term describing organisms affected by imposex, a condition resulting in the development of a penis and vas deferens in female gastropods when exposed to certain pollutants. | 2023-08-14 |
| S193 | pirus type | A recognised morphotype of the named organism. The term is usually associated with coccolithophores. | 2014-11-19 |
| S1348 | plastidic | A term describing cells that have organelles termed plastids for the storage of pigments or food; plastids are found in plants and algae. | 2022-04-27 |
| S1369 | preserved | A biological sample that has been treated, for example by freezing or addition of chemicals such as formaldehyde or ethanol, to prevent decomposition. | 2023-05-16 |
| S1324 | shallow-adapted | 2006-02-17 | |
| S1325 | single chloroplast | 2006-02-17 | |
| S165 | sp. 1 | Label used by the data originator to differentiate unidentified and presumed single species belonging to a known group of organisms (generally a genus) within a single sample or a batch of samples. | 2014-09-02 |
| S174 | sp. 10 | Label used by the data originator to differentiate unidentified and presumed single species belonging to a known group of organisms (generally a genus) within a single sample or a batch of samples. | 2014-09-02 |
| S166 | sp. 2 | Label used by the data originator to differentiate unidentified and presumed single species belonging to a known group of organisms (generally a genus) within a single sample or a batch of samples. | 2014-09-02 |
| S167 | sp. 3 | Label used by the data originator to differentiate unidentified and presumed single species belonging to a known group of organisms (generally a genus) within a single sample or a batch of samples. | 2014-09-02 |
| S168 | sp. 4 | Label used by the data originator to differentiate unidentified and presumed single species belonging to a known group of organisms (generally a genus) within a single sample or a batch of samples. | 2014-09-02 |
| S169 | sp. 5 | Label used by the data originator to differentiate unidentified and presumed single species belonging to a known group of organisms (generally a genus) within a single sample or a batch of samples. | 2014-09-02 |
| S170 | sp. 6 | Label used by the data originator to differentiate unidentified and presumed single species belonging to a known group of organisms (generally a genus) within a single sample or a batch of samples. | 2014-09-02 |
| S171 | sp. 7 | Label used by the data originator to differentiate unidentified and presumed single species belonging to a known group of organisms (generally a genus) within a single sample or a batch of samples. | 2014-09-02 |
| S172 | sp. 8 | Label used by the data originator to differentiate unidentified and presumed single species belonging to a known group of organisms (generally a genus) within a single sample or a batch of samples. | 2014-09-02 |
| S173 | sp. 9 | Label used by the data originator to differentiate unidentified and presumed single species belonging to a known group of organisms (generally a genus) within a single sample or a batch of samples. | 2014-09-02 |
| S175 | sp. A | Label used by the data originator to differentiate unidentified and presumed single species belonging to a known group of organisms (generally a genus) within a single sample or a batch of samples. | 2014-09-02 |
| S179 | sp. A autotrophic | Label used by the data originator to differentiate unidentified and presumed single species belonging to a group of organisms with visible chloroplasts within a single sample or a batch of samples. | 2014-09-04 |
| S183 | sp. A heterotrophic | Label used by the data originator to differentiate unidentified and presumed single species belonging to a group of organisms with no visible chloroplasts within a single sample or a batch of samples. | 2014-09-04 |
| S176 | sp. B | Label used by the data originator to differentiate unidentified and presumed single species belonging to a known group of organisms (generally a genus) within a single sample or a batch of samples. | 2014-09-02 |
| S180 | sp. B autotrophic | Label used by the data originator to differentiate unidentified and presumed single species belonging to a group of organisms with visible chloroplasts within a single sample or a batch of samples. | 2014-09-04 |
| S184 | sp. B heterotrophic | Label used by the data originator to differentiate unidentified and presumed single species belonging to a group of organisms with no visible chloroplasts within a single sample or a batch of samples. | 2014-09-04 |
| S177 | sp. C | Label used by the data originator to differentiate unidentified and presumed single species belonging to a known group of organisms (generally a genus) within a single sample or a batch of samples. | 2014-09-02 |
| S181 | sp. C autotrophic | Label used by the data originator to differentiate unidentified and presumed single species belonging to a group of organisms with visible chloroplasts within a single sample or a batch of samples. | 2014-09-04 |
| S186 | sp. C colonial | Label used by the data originator to differentiate unidentified and presumed single species that has cells which associate together within a single sample or a batch of samples . | 2014-09-04 |
| S185 | sp. C heterotrophic | Label used by the data originator to differentiate unidentified and presumed single species belonging to a group of organisms with no visible chloroplasts within a single sample or a batch of samples. | 2014-09-04 |
| S178 | sp. D | Label used by the data originator to differentiate unidentified and presumed single species belonging to a known group of organisms (generally a genus) within a single sample or a batch of samples. | 2014-09-02 |
| S182 | sp. D autotrophic | Label used by the data originator to differentiate unidentified and presumed single species belonging to a group of organisms with visible chloroplasts within a single sample or a batch of samples. | 2014-09-04 |
| S187 | species aggregate | A group of very closely related organisms similar to the species named but known to include multiple species which cannot be differentiated at the time of the analysis. | 2014-10-31 |
| S1367 | stranding | Term to be used when the property reported is said to be the characteristic of a stranding. The term applies to marine organisms (animals or seaweeds) found washed up on the shore in a dead, dying or abnormal state. | 2023-02-22 |
| S1341 | unicellular group A phylotype | 2010-01-17 | |
| S192 | wettsteinii type | A recognised morphotype of the named organism. The term is usually associated with coccolithophores. | 2014-11-19 |
| S1326 | with chl-a and plasma | 2006-02-17 | |
| S1327 | with chl-a and plasma: other species | 2006-02-17 | |
| S1352 | with four birefringent spots | A characteristic of minerals (usually coccoliths in this context) that display groups of four coloured spots under cross-polarised light sometimes referred to as quads. | 2012-11-07 |
| S1328 | with hair chaetes | 2006-02-17 | |
| S1364 | with percentage necrosis >=10% | The targeted biological entity has a proportion of necrosis greater or equal to 10 percent; for coralligeneous colonies, this is relative to the total living area of the colony. | 2022-05-13 |
| S1332 | with spermatophores at the genital aperture or attached to the petasma | 2006-02-17 | |
| S1330 | with spermatophores or spermatozoa inside the thelycum | 2006-02-17 | |
| S1333 | without external spermatophores | 2006-02-17 | |
| S1329 | without hair chaetes | 2006-02-17 | |
| S1331 | without spermatophores | 2006-02-17 |
